mirror of https://github.com/Wilfred/difftastic/
904 lines
30 KiB
Plaintext
904 lines
30 KiB
Plaintext
(
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(
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(
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Drosophila_melanogaster,
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Caenorhabditis_elegans
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)
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,
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(
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(
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Ciona_intestinalis,
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Ciona_savignyi
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)
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,
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(
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(
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Eptatretus_burgeri,
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Petromyzon_marinus
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)
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,
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(
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(
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(
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(
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(
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(
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(
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(
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(
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(
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(
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Astyanax_mexicanus,
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Pygocentrus_nattereri
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)
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,
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Electrophorus_electricus
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)
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,
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Ictalurus_punctatus
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)
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,
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(
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(
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(
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Cyprinus_carpio_carpio,
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Sinocyclocheilus_grahami
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)
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,
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Carassius_auratus
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)
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,
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Danio_rerio
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)
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)
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,
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(
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Clupea_harengus,
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Denticeps_clupeoides
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)
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)
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,
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(
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(
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(
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(
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(
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(
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(
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(
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(
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(
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Kryptolebias_marmoratus,
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Nothobranchius_furzeri
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)
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,
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(
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(
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Fundulus_heteroclitus,
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Cyprinodon_variegatus
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)
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,
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(
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(
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(
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Poecilia_latipinna,
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Poecilia_formosa
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)
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,
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Poecilia_reticulata
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)
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,
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Xiphophorus_maculatus
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)
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)
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)
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,
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(
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(
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Oryzias_javanicus,
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Oryzias_melastigma
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)
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,
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(
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Oryzias_latipes,
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Oryzias_sinensis
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)
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)
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)
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,
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(
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(
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(
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(
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(
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(
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(
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Maylandia_zebra,
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Astatotilapia_calliptera
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)
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,
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Pundamilia_nyererei
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)
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,
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Haplochromis_burtoni
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)
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,
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Neolamprologus_brichardi
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)
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,
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Oreochromis_niloticus
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)
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,
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Amphilophus_citrinellus
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)
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,
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(
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(
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(
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Amphiprion_percula,
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Amphiprion_ocellaris
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)
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,
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Acanthochromis_polyacanthus
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)
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,
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Stegastes_partitus
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)
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)
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)
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,
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(
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(
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(
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Cynoglossus_semilaevis,
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Scophthalmus_maximus
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)
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,
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(
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(
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Seriola_dumerili,
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Seriola_lalandi_dorsalis
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)
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,
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Lates_calcarifer
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)
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)
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,
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(
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(
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Anabas_testudineus,
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Betta_splendens
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)
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,
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Mastacembelus_armatus
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)
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)
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)
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,
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(
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(
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(
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(
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(
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Cyclopterus_lumpus,
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Gasterosteus_aculeatus
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)
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,
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(
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Cottoperca_gobio,
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Sander_lucioperca
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)
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)
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,
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(
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(
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Larimichthys_crocea,
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Dicentrarchus_labrax
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)
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,
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Sparus_aurata
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)
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)
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,
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Labrus_bergylta
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)
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,
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(
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Tetraodon_nigroviridis,
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Takifugu_rubripes
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)
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)
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)
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,
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Hippocampus_comes
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)
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,
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Myripristis_murdjan
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)
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,
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Gadus_morhua
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)
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,
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(
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(
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(
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(
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(
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Oncorhynchus_kisutch,
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Oncorhynchus_tshawytscha
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)
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,
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Oncorhynchus_mykiss
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)
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,
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(
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Salmo_salar,
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Salmo_trutta
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)
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)
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,
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Hucho_hucho
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)
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,
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Esox_lucius
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)
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)
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)
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,
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(
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Scleropages_formosus,
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Paramormyrops_kingsleyae
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)
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)
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,
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Lepisosteus_oculatus
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)
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,
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Erpetoichthys_calabaricus
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)
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,
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(
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(
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(
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Leptobrachium_leishanense,
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Xenopus_tropicalis
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)
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,
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(
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(
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(
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(
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(
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(
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(
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(
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Erinaceus_europaeus,
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Sorex_araneus
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)
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,
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(
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(
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(
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(
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(
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Rhinolophus_ferrumequinum,
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Myotis_lucifugus
|
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)
|
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,
|
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Pteropus_vampyrus
|
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)
|
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,
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(
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Equus_caballus,
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Equus_asinus_asinus
|
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)
|
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)
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,
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(
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(
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(
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(
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(
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(
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(
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Ovis_aries_reference_breed,
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Capra_hircus_reference_breed
|
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)
|
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,
|
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(
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(
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(
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Bos_indicus_x_Bos_taurus,
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Bos_taurus
|
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)
|
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,
|
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(
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Bos_mutus,
|
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Bos_grunniens
|
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)
|
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|
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)
|
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,
|
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Bison_bison_bison
|
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)
|
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)
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,
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Moschus_moschiferus
|
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)
|
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,
|
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Cervus_hanglu_yarkandensis
|
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)
|
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,
|
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(
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(
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(
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(
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(
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Monodon_monoceros,
|
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Delphinapterus_leucas
|
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)
|
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,
|
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Phocoena_sinus
|
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)
|
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,
|
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Tursiops_truncatus
|
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)
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,
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Physeter_catodon
|
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)
|
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,
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Balaenoptera_musculus
|
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)
|
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)
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,
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(
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(
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(
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(
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(
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(
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(
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Sus_scrofa_breed_jinhua,
|
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Sus_scrofa_breed_meishan
|
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)
|
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,
|
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Sus_scrofa_breed_rongchang
|
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)
|
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,
|
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Sus_scrofa_breed_tibetan
|
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)
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,
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Sus_scrofa_breed_bamei
|
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)
|
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,
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Sus_scrofa_breed_wuzhishan
|
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)
|
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,
|
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(
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(
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Sus_scrofa_reference_breed,
|
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Sus_scrofa_breed_usmarc
|
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)
|
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,
|
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(
|
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(
|
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(
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Sus_scrofa_breed_hampshire,
|
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Sus_scrofa_breed_berkshire
|
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)
|
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,
|
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Sus_scrofa_breed_landrace
|
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)
|
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,
|
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(
|
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Sus_scrofa_breed_largewhite,
|
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Sus_scrofa_breed_pietrain
|
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)
|
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|
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)
|
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|
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)
|
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|
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)
|
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,
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Catagonus_wagneri
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)
|
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)
|
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,
|
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(
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Camelus_dromedarius,
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Vicugna_pacos
|
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)
|
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)
|
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)
|
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,
|
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(
|
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(
|
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(
|
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(
|
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(
|
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Ursus_maritimus,
|
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Ursus_americanus
|
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)
|
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,
|
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Ailuropoda_melanoleuca_reference_isolate
|
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)
|
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,
|
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(
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Neogale_vison,
|
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Mustela_putorius_furo
|
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)
|
|
|
|
)
|
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,
|
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(
|
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(
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Canis_lupus_familiaris_breed_Labrador_retriever,
|
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Canis_lupus_dingo
|
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)
|
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,
|
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Vulpes_vulpes
|
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)
|
|
|
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)
|
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,
|
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(
|
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(
|
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(
|
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Panthera_leo,
|
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Panthera_pardus
|
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)
|
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,
|
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Panthera_tigris_altaica
|
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)
|
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,
|
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Felis_catus
|
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)
|
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)
|
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)
|
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)
|
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,
|
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(
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(
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(
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(
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(
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(
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(
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(
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(
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(
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(
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Cricetulus_griseus,
|
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Mesocricetus_auratus
|
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)
|
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,
|
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Peromyscus_maniculatus_bairdii
|
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)
|
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,
|
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Microtus_ochrogaster
|
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)
|
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,
|
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(
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(
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(
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(
|
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(
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Mus_spicilegus,
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Mus_spretus_strain_SPRET/EiJ
|
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)
|
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,
|
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(
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(
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(
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(
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(
|
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(
|
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(
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Mus_musculus_reference_CL57BL6_strain,
|
|
Mus_musculus_strain_C57BL/6NJ
|
|
)
|
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,
|
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Mus_musculus_strain_NZO/HlLtJ
|
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)
|
|
,
|
|
(
|
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(
|
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(
|
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(
|
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Mus_musculus_strain_A/J,
|
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Mus_musculus_strain_BALB/cJ
|
|
)
|
|
,
|
|
(
|
|
(
|
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Mus_musculus_strain_C3H/HeJ,
|
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Mus_musculus_strain_CBA/J
|
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)
|
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,
|
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Mus_musculus_strain_DBA/2J
|
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)
|
|
|
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)
|
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,
|
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Mus_musculus_strain_AKR/J
|
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)
|
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,
|
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(
|
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Mus_musculus_strain_FVB/NJ,
|
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Mus_musculus_strain_NOD/ShiLtJ
|
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)
|
|
|
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)
|
|
|
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)
|
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,
|
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(
|
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Mus_musculus_strain_129S1/SvImJ,
|
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Mus_musculus_strain_LP/J
|
|
)
|
|
|
|
)
|
|
,
|
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Mus_musculus_domesticus_strain_WSB/EiJ
|
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)
|
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,
|
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Mus_musculus_musculus_strain_PWK/PhJ
|
|
)
|
|
,
|
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Mus_musculus_castaneus_strain_CAST/EiJ
|
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)
|
|
|
|
)
|
|
,
|
|
Mus_caroli_strain_CAROLI_EIJ
|
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)
|
|
,
|
|
Mus_pahari_strain_PAHARI_EIJ
|
|
)
|
|
,
|
|
Rattus_norvegicus_strain_BN/NHsdMcwi
|
|
)
|
|
|
|
)
|
|
,
|
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Nannospalax_galili
|
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)
|
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,
|
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Jaculus_jaculus
|
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)
|
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,
|
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Dipodomys_ordii
|
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)
|
|
,
|
|
(
|
|
(
|
|
(
|
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(
|
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Chinchilla_lanigera,
|
|
Cavia_porcellus
|
|
)
|
|
,
|
|
Heterocephalus_glaber
|
|
)
|
|
,
|
|
Octodon_degus
|
|
)
|
|
,
|
|
(
|
|
(
|
|
(
|
|
Urocitellus_parryii,
|
|
Ictidomys_tridecemlineatus
|
|
)
|
|
,
|
|
Marmota_marmota_marmota
|
|
)
|
|
,
|
|
Sciurus_vulgaris
|
|
)
|
|
|
|
)
|
|
|
|
)
|
|
,
|
|
(
|
|
Oryctolagus_cuniculus,
|
|
Ochotona_princeps
|
|
)
|
|
|
|
)
|
|
,
|
|
Tupaia_belangeri
|
|
)
|
|
,
|
|
(
|
|
(
|
|
(
|
|
(
|
|
(
|
|
(
|
|
(
|
|
(
|
|
(
|
|
Pan_troglodytes,
|
|
Pan_paniscus
|
|
)
|
|
,
|
|
Homo_sapiens
|
|
)
|
|
,
|
|
Gorilla_gorilla_gorilla
|
|
)
|
|
,
|
|
Pongo_abelii
|
|
)
|
|
,
|
|
Nomascus_leucogenys
|
|
)
|
|
,
|
|
(
|
|
(
|
|
(
|
|
(
|
|
(
|
|
Cercocebus_atys,
|
|
Mandrillus_leucophaeus
|
|
)
|
|
,
|
|
Papio_anubis
|
|
)
|
|
,
|
|
(
|
|
(
|
|
Macaca_mulatta,
|
|
Macaca_fascicularis
|
|
)
|
|
,
|
|
Macaca_nemestrina
|
|
)
|
|
|
|
)
|
|
,
|
|
Chlorocebus_sabaeus
|
|
)
|
|
,
|
|
(
|
|
Rhinopithecus_roxellana,
|
|
Rhinopithecus_bieti
|
|
)
|
|
|
|
)
|
|
|
|
)
|
|
,
|
|
(
|
|
(
|
|
(
|
|
Cebus_imitator,
|
|
Saimiri_boliviensis_boliviensis
|
|
)
|
|
,
|
|
Callithrix_jacchus
|
|
)
|
|
,
|
|
Aotus_nancymaae
|
|
)
|
|
|
|
)
|
|
,
|
|
Carlito_syrichta
|
|
)
|
|
,
|
|
(
|
|
(
|
|
(
|
|
Prolemur_simus,
|
|
Propithecus_coquereli
|
|
)
|
|
,
|
|
Microcebus_murinus
|
|
)
|
|
,
|
|
Otolemur_garnettii
|
|
)
|
|
|
|
)
|
|
|
|
)
|
|
|
|
)
|
|
,
|
|
(
|
|
Dasypus_novemcinctus,
|
|
Choloepus_hoffmanni
|
|
)
|
|
|
|
)
|
|
,
|
|
(
|
|
(
|
|
Loxodonta_africana,
|
|
Procavia_capensis
|
|
)
|
|
,
|
|
Echinops_telfairi
|
|
)
|
|
|
|
)
|
|
,
|
|
(
|
|
(
|
|
(
|
|
(
|
|
Vombatus_ursinus,
|
|
Phascolarctos_cinereus
|
|
)
|
|
,
|
|
Notamacropus_eugenii
|
|
)
|
|
,
|
|
Sarcophilus_harrisii
|
|
)
|
|
,
|
|
Monodelphis_domestica
|
|
)
|
|
|
|
)
|
|
,
|
|
Ornithorhynchus_anatinus
|
|
)
|
|
,
|
|
(
|
|
(
|
|
(
|
|
(
|
|
(
|
|
(
|
|
(
|
|
Notechis_scutatus,
|
|
Pseudonaja_textilis
|
|
)
|
|
,
|
|
Laticauda_laticaudata
|
|
)
|
|
,
|
|
Naja_naja
|
|
)
|
|
,
|
|
Anolis_carolinensis_reference_strain
|
|
)
|
|
,
|
|
(
|
|
Salvator_merianae,
|
|
Podarcis_muralis
|
|
)
|
|
|
|
)
|
|
,
|
|
Sphenodon_punctatus
|
|
)
|
|
,
|
|
(
|
|
(
|
|
(
|
|
(
|
|
(
|
|
(
|
|
(
|
|
Gallus_gallus_reference_breed,
|
|
Meleagris_gallopavo_reference_strain
|
|
)
|
|
,
|
|
Coturnix_japonica
|
|
)
|
|
,
|
|
(
|
|
Anas_platyrhynchos_platyrhynchos,
|
|
Anser_brachyrhynchus
|
|
)
|
|
|
|
)
|
|
,
|
|
(
|
|
(
|
|
Aquila_chrysaetos_chrysaetos,
|
|
Strigops_habroptila
|
|
)
|
|
,
|
|
(
|
|
(
|
|
(
|
|
(
|
|
Serinus_canaria,
|
|
Taeniopygia_guttata
|
|
)
|
|
,
|
|
Geospiza_fortis
|
|
)
|
|
,
|
|
Parus_major
|
|
)
|
|
,
|
|
Ficedula_albicollis
|
|
)
|
|
|
|
)
|
|
|
|
)
|
|
,
|
|
Struthio_camelus_australis
|
|
)
|
|
,
|
|
Crocodylus_porosus
|
|
)
|
|
,
|
|
(
|
|
(
|
|
(
|
|
Gopherus_evgoodei,
|
|
Chelonoidis_abingdonii
|
|
)
|
|
,
|
|
(
|
|
Terrapene_carolina_triunguis,
|
|
Chrysemys_picta_bellii
|
|
)
|
|
|
|
)
|
|
,
|
|
Pelodiscus_sinensis
|
|
)
|
|
|
|
)
|
|
|
|
)
|
|
|
|
)
|
|
|
|
)
|
|
,
|
|
Latimeria_chalumnae
|
|
)
|
|
|
|
)
|
|
,
|
|
Callorhinchus_milii
|
|
)
|
|
|
|
)
|
|
|
|
)
|
|
|
|
)
|
|
,
|
|
Saccharomyces_cerevisiae;
|